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  • GitHub - idrblab ALLSites
    Accurate Identification of Protein Binding Sites for All Drug Modalities Using ALLSites A deep learning framework for predicting protein binding sites using transformer-based architecture with convolutional encoders and attention mechanisms
  • Accurate Identification of Protein Binding Sites for All Drug . . .
    ALLSites achieves accurate protein binding site prediction for various drug modalities, including proteins, peptides, small molecules, carbohydrates, DNA, and RNA, while maintaining broad applicability
  • Adv. Sci. | ALLSites: 基于序列的蛋白质全模态药物结合位点 . . .
    糖分子是一类特殊的小分子,具有独特的化学性质,其结合位点与典型小分子存在本质差异。 ALLSites在糖分子结合位点预测中展现出了对这种特殊性的良好适应能力。 与三种结构方法FTMap、CAPSIF:V和CAPSIF:G相比,ALLSites在所有评估指标上都取得了最佳表现。
  • AllSites
    在PepPI-Test125数据集上,ALLSites在AUROC和MCC两个关键指标上同时优于所有基于序列和基于结构的方法。 在AUROC指标方面,其表现不仅超过了所有序列方法,还略高于表现最优的结构方法PepNN-Struct;在MCC指标上,ALLSites优于全部结构方法,仅比性能最佳的PepBCL低0 002,差距极小。
  • ALLSites:基于序列的统一深度学习框架精准识别全药物 . . .
    本研究构建了统一的基于序列的框架ALLSites,用于识别所有药物模式的蛋白质组范围结合位点。 利用ESM-2嵌入,ALLSites整合门控卷积网络与Transformer架构,从序列中直接捕获全局和局部序列特征,有效模拟残基相互作用。
  • Adv. Sci. | ALLSites: 基于序列的蛋白质全模态药物结合位点 . . .
    糖分子是一类特殊的小分子,具有独特的化学性质,其结合位点与典型小分子存在本质差异。 ALLSites在糖分子结合位点预测中展现出了对这种特殊性的良好适应能力。 与三种结构方法FTMap、CAPSIF:V和CAPSIF:G相比,ALLSites在所有评估指标上都取得了最佳表现。
  • Accurate Identification of Protein Binding Sites for All Drug . . .
    ALLSites is a unified sequence‐based framework for identifying proteome‐wide binding sites across all drug modalities It integrates a gated convolutional network with a transformer architecture to capture residue interactions directly from the sequence
  • Accurate Identification of Protein Binding Sites for All Drug . . .
    A unified sequence‐based framework, ALLSites, is constructed to identify proteome‐wide binding sites across all drug modalities and achieves state‐of‐the‐art performance among sequence‐based methods and matches the accuracy of the best structure‐based tools
  • Accurate Identification of Protein Binding Sites for All Drug . . .
    Here, a unified sequence-based framework, ALLSites, is constructed to identify proteome-wide binding sites across all drug modalities
  • Accurate Identification of Protein Binding Sites for All Drug . . .
    The balance between accuracyandapplicabilitymakes ALLSites avaluable resource foradvancingtheunderstanding ofproteome-wide druggability andacceleratingthetranslationofvarious molecular modalities intoclinicalapplications





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